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CIA Perl client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276187680 emanuele 7172216 Makefile bin/atlaslabeler bin/mvpa-prep-fmri doc/examples/clfs_examples.py doc/examples/curvefitting.py doc/examples/erp_plot.py doc/examples/eventrelated.py doc/examples/gpr.py doc/examples/gpr_model_selection0.py doc/examples/match_distribution.py doc/examples/permutation_test.py doc/examples/projections.py doc/examples/pylab_2d.py doc/examples/searchlight_dsm.py doc/examples/searchlight_minimal.py doc/examples/smellit.py doc/examples/smlr.py doc/examples/svdclf.py doc/examples/topo_plot.py doc/examples/tutorial_lib.py doc/source/_static/pymvpa_logo.jpg doc/source/classifiers.rst doc/source/conf.py doc/source/faq.rst doc/source/measures.rst doc/source/modref.rst doc/source/tutorial.rst doc/source/tutorial1_start.rst doc/source/tutorial2_datasets.rst doc/source/tutorial3_mappers.rst doc/source/tutorial4_classifiers.rst doc/source/tutorial5_searchlight.rst doc/source/tutorial6_sensitivity.rst doc/source/tutorial7_eventrelated.rst doc/source/tutorial8_significance.rst doc/source/tutorial_classifiers.rst doc/source/tutorial_datasets.rst doc/source/tutorial_eventrelated.rst doc/source/tutorial_mappers.rst doc/source/tutorial_searchlight.rst doc/source/tutorial_sensitivity.rst doc/source/tutorial_significance.rst doc/source/tutorial_start.rst mvpa/atlases/base.py mvpa/atlases/fsl.py mvpa/atlases/transformation.py mvpa/base/__init__.py mvpa/base/externals.py mvpa/base/hdf5.py mvpa/base/report.py mvpa/base/verbosity.py mvpa/clfs/base.py mvpa/clfs/distance.py mvpa/clfs/gnb.py mvpa/clfs/gpr.py mvpa/clfs/knn.py mvpa/clfs/libsvmc/_svm.py mvpa/clfs/libsvmc/svm.py mvpa/clfs/meta.py mvpa/clfs/ridge.py mvpa/clfs/smlr.py mvpa/clfs/stats.py mvpa/clfs/transerror.py mvpa/data/v73.mat mvpa/datasets/channel.py mvpa/datasets/miscfx.py mvpa/datasets/splitters.py mvpa/featsel/helpers.py mvpa/mappers/base.py mvpa/mappers/projection.py mvpa/mappers/wavelet.py mvpa/mappers/zscore.py mvpa/measures/base.py mvpa/misc/cmdline.py mvpa/misc/data_generators.py mvpa/misc/errorfx.py mvpa/misc/fsl/base.py mvpa/misc/fsl/flobs.py mvpa/misc/fx.py mvpa/misc/io/base.py mvpa/misc/plot/base.py mvpa/misc/plot/erp.py mvpa/misc/plot/topo.py mvpa/misc/support.py mvpa/misc/transformers.py mvpa/testing/__init__.py mvpa/tests/__init__.py mvpa/tests/main.py mvpa/tests/runner.py mvpa/tests/test_atlases.py mvpa/tests/test_clf.py mvpa/tests/test_clfcrossval.py mvpa/tests/test_cmdline.py mvpa/tests/test_datameasure.py mvpa/tests/test_dataset.py mvpa/tests/test_datasetfx.py mvpa/tests/test_datasetng.py mvpa/tests/test_enet.py mvpa/tests/test_glmnet.py mvpa/tests/test_hdf5.py mvpa/tests/test_hyperalignment.py mvpa/tests/test_iohelpers.py mvpa/tests/test_knn.py mvpa/tests/test_lars.py mvpa/tests/test_mdp.py mvpa/tests/test_neighborhood.py mvpa/tests/test_niftidataset.py mvpa/tests/test_rfe.py mvpa/tests/test_smlr.py mvpa/tests/test_stats.py mvpa/tests/test_stats_sp.py mvpa/tests/test_support.py mvpa/tests/test_svm.py mvpa/tests/test_svmkernels.py mvpa/tests/test_transerror.py mvpa/tests/test_transformers.py mvpa/tests/test_verbosity.py mvpa/tests/test_waveletmapper.py mvpa/tests/test_zscoremapper.py mvpa/tests/tests_warehouse.py tools/bib2rst_ref.py tools/daily_tests.sh tools/refactor_camel_case.sh tools/sitemap.sh Merge commit 'alioth/mh/master' into eo/master CIA Perl client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276187621 emanuele 74b323a mvpa/featsel/base.py DOC: documenting unexpected sharing of .labels and .chunks. CIA Perl client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276187442 emanuele 481074a doc/source/tutorial4_classifiers.rst mvpa/base/collections.py mvpa/clfs/knn.py mvpa/clfs/stats.py mvpa/featsel/rfe.py mvpa/mappers/base.py mvpa/mappers/projection.py mvpa/mappers/svd.py mvpa/misc/plot/base.py mvpa/tests/test_collections.py mvpa/tests/test_knn.py tools/refactor_camel_case.sh Merge commit 'alioth/mh/master' into eo/master CIA Perl client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276187200 emanuele 74b323a mvpa/featsel/base.py DOC: documenting unexpected sharing of .labels and .chunks. CIA Perl client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276187200 emanuele 74b323a mvpa/featsel/base.py DOC: documenting unexpected sharing of .labels and .chunks. CIA Perl client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276187142 emanuele 56e12b0 COPYING Changelog Makefile TODO bin/atlaslabeler doc/examples/clfs_examples.py doc/examples/curvefitting.py doc/examples/eventrelated.py doc/examples/gpr.py doc/examples/gpr_model_selection0.py doc/examples/match_distribution.py doc/examples/mdp_mnist.py doc/examples/mri_plot.py doc/examples/permutation_test.py doc/examples/projections.py doc/examples/pylab_2d.py doc/examples/pymvpa.cfg doc/examples/searchlight.py doc/examples/searchlight_app.py doc/examples/searchlight_dsm.py doc/examples/searchlight_minimal.py doc/examples/sensanas.py doc/examples/smellit.py doc/examples/smlr.py doc/examples/start_easy.py doc/examples/svdclf.py doc/examples/tutorial_lib.py doc/misc/references.bib doc/misc/references.in doc/pics/.gitignore doc/pics/Makefile doc/pics/ex_plot_lightbox.svg doc/pics/pymvpa_icons.svg doc/pics/pymvpa_logo.svg doc/source/_static/.gitignore doc/source/_static/logo.pdf 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mvpa/atlases/base.py mvpa/atlases/fsl.py mvpa/atlases/warehouse.py mvpa/base/__init__.py mvpa/base/config.py mvpa/base/dataset.py mvpa/base/dochelpers.py mvpa/base/externals.py mvpa/base/info.py mvpa/base/verbosity.py mvpa/clfs/_svmbase.py mvpa/clfs/base.py mvpa/clfs/blr.py mvpa/clfs/distance.py mvpa/clfs/enet.py mvpa/clfs/glmnet.py mvpa/clfs/gnb.py mvpa/clfs/gpr.py mvpa/clfs/knn.py mvpa/clfs/lars.py mvpa/clfs/libsvmc/_svm.py mvpa/clfs/libsvmc/sens.py mvpa/clfs/libsvmc/svm.py mvpa/clfs/meta.py mvpa/clfs/plr.py mvpa/clfs/ridge.py mvpa/clfs/sg/sens.py mvpa/clfs/sg/svm.py mvpa/clfs/smlr.py mvpa/clfs/stats.py mvpa/clfs/transerror.py mvpa/clfs/warehouse.py mvpa/datasets/__init__.py mvpa/datasets/base.py mvpa/datasets/channel.py mvpa/datasets/eep.py mvpa/datasets/miscfx.py mvpa/datasets/mri.py mvpa/datasets/splitters.py mvpa/featsel/base.py mvpa/featsel/helpers.py mvpa/featsel/ifs.py mvpa/featsel/rfe.py mvpa/kernels/base.py mvpa/kernels/np.py mvpa/mappers/__init__.py mvpa/mappers/base.py 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mvpa/tests/test_datasetfx.py mvpa/tests/test_datasetng.py mvpa/tests/test_eepdataset.py mvpa/tests/test_enet.py mvpa/tests/test_fxmapper.py mvpa/tests/test_glmnet.py mvpa/tests/test_gnb.py mvpa/tests/test_gpr.py mvpa/tests/test_hyperalignment.py mvpa/tests/test_ifs.py mvpa/tests/test_iohelpers.py mvpa/tests/test_knn.py mvpa/tests/test_lars.py mvpa/tests/test_mapper_sp.py mvpa/tests/test_mdp.py mvpa/tests/test_neighborhood.py mvpa/tests/test_niftidataset.py mvpa/tests/test_params.py mvpa/tests/test_perturbsensana.py mvpa/tests/test_plr.py mvpa/tests/test_procrust.py mvpa/tests/test_prototypemapper.py mvpa/tests/test_regr.py mvpa/tests/test_report.py mvpa/tests/test_rfe.py mvpa/tests/test_ridge.py mvpa/tests/test_searchlight.py mvpa/tests/test_smlr.py mvpa/tests/test_som.py mvpa/tests/test_splitter.py mvpa/tests/test_state.py mvpa/tests/test_stats.py mvpa/tests/test_stats_sp.py mvpa/tests/test_support.py mvpa/tests/test_svm.py mvpa/tests/test_transerror.py mvpa/tests/test_transformers.py mvpa/tests/test_zscoremapper.py mvpa/tests/tests_warehouse.py mvpa/tests/tests_warehouse_clfs.py setup.py tools/bib2rst_ref.py tools/daily_tests.sh tools/ex2rst tools/fillin_states tools/refactor_camel_case.sh tools/state_refactor.sh Merge commit 'alioth/mh/master' into eo/master CIA Perl client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276184515 emanuele 56d1af4 Makefile doc/examples/mdp_mnist.py doc/examples/pylab_2d.py doc/examples/searchlight_dsm.py doc/examples/searchlight_minimal.py doc/examples/smlr.py doc/source/datasets.rst doc/source/modref.rst doc/source/tutorial3_mappers.rst mvpa/algorithms/hyperalignment.py mvpa/base/dataset.py mvpa/base/dochelpers.py mvpa/clfs/base.py mvpa/clfs/gpr.py mvpa/datasets/__init__.py mvpa/datasets/base.py mvpa/datasets/channel.py mvpa/datasets/eep.py mvpa/datasets/miscfx.py mvpa/datasets/mri.py mvpa/kernels/np.py mvpa/mappers/base.py mvpa/mappers/detrend.py mvpa/mappers/filter.py mvpa/mappers/zscore.py mvpa/misc/data_generators.py 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client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276184047 emanuele abe7205 Makefile doc/examples/mri_plot.py doc/examples/searchlight.py doc/examples/searchlight_2d.py doc/examples/searchlight_app.py doc/examples/searchlight_dsm.py doc/examples/searchlight_minimal.py doc/misc/references.bib doc/pics/.gitignore doc/pics/Makefile doc/pics/ex_searchlight_vt_r0.svg doc/pics/ex_searchlight_vt_r1.svg doc/pics/ex_searchlight_vt_r3.svg doc/source/classifiers.rst doc/source/conf.py doc/source/contents.rst doc/source/datadb/haxby2001.rst doc/source/datadb/mnist.rst doc/source/datasets.rst doc/source/examples.rst doc/source/faq.rst doc/source/featsel.rst doc/source/manual.rst doc/source/matlab.rst doc/source/measures.rst doc/source/misc.rst doc/source/modref.rst doc/source/pics/.gitignore doc/source/references.rst doc/source/tutorial.rst doc/source/tutorial1_start.rst doc/source/tutorial2_datasets.rst doc/source/tutorial3_mappers.rst doc/source/tutorial4_classifiers.rst doc/source/tutorial5_searchlight.rst doc/source/workshops/2009-fall.rst mvpa/__init__.py mvpa/algorithms/hyperalignment.py mvpa/base/__init__.py mvpa/base/collections.py mvpa/base/dataset.py mvpa/base/dochelpers.py mvpa/base/externals.py mvpa/base/hdf5.py mvpa/base/info.py mvpa/base/report.py mvpa/clfs/libsvmc/sens.py mvpa/clfs/sg/sens.py mvpa/clfs/similarity.py mvpa/datasets/base.py mvpa/datasets/mri.py mvpa/featsel/base.py mvpa/featsel/helpers.py mvpa/featsel/ifs.py mvpa/kernels/np.py mvpa/mappers/detrend.py mvpa/mappers/flatten.py mvpa/mappers/procrustean.py mvpa/measures/anova.py mvpa/measures/base.py mvpa/measures/pls.py mvpa/measures/searchlight.py mvpa/misc/attributes.py mvpa/misc/data_generators.py mvpa/misc/param.py mvpa/misc/plot/lightbox.py mvpa/support/_copy.py mvpa/support/copy.py mvpa/tests/test_base.py mvpa/tests/test_datameasure.py mvpa/tests/test_dochelpers.py mvpa/tests/test_hyperalignment.py mvpa/tests/test_mdp.py mvpa/tests/test_niftidataset.py mvpa/tests/test_procrust.py mvpa/tests/test_report.py mvpa/tests/test_state.py mvpa/tests/tests_warehouse.py setup.py tools/daily_tests.sh tools/ex2rst Merge commit 'alioth/mh/master' into eo/master CIA Perl client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276182998 emanuele 7172216 Makefile bin/atlaslabeler bin/mvpa-prep-fmri doc/examples/clfs_examples.py doc/examples/curvefitting.py doc/examples/erp_plot.py doc/examples/eventrelated.py doc/examples/gpr.py doc/examples/gpr_model_selection0.py doc/examples/match_distribution.py doc/examples/permutation_test.py doc/examples/projections.py doc/examples/pylab_2d.py doc/examples/searchlight_dsm.py doc/examples/searchlight_minimal.py doc/examples/smellit.py doc/examples/smlr.py doc/examples/svdclf.py doc/examples/topo_plot.py doc/examples/tutorial_lib.py doc/source/_static/pymvpa_logo.jpg doc/source/classifiers.rst doc/source/conf.py doc/source/faq.rst doc/source/measures.rst doc/source/modref.rst doc/source/tutorial.rst doc/source/tutorial1_start.rst doc/source/tutorial2_datasets.rst doc/source/tutorial3_mappers.rst doc/source/tutorial4_classifiers.rst doc/source/tutorial5_searchlight.rst doc/source/tutorial6_sensitivity.rst doc/source/tutorial7_eventrelated.rst doc/source/tutorial8_significance.rst doc/source/tutorial_classifiers.rst doc/source/tutorial_datasets.rst doc/source/tutorial_eventrelated.rst doc/source/tutorial_mappers.rst doc/source/tutorial_searchlight.rst doc/source/tutorial_sensitivity.rst doc/source/tutorial_significance.rst doc/source/tutorial_start.rst mvpa/atlases/base.py mvpa/atlases/fsl.py mvpa/atlases/transformation.py mvpa/base/__init__.py mvpa/base/externals.py mvpa/base/hdf5.py mvpa/base/report.py mvpa/base/verbosity.py mvpa/clfs/base.py mvpa/clfs/distance.py mvpa/clfs/gnb.py mvpa/clfs/gpr.py mvpa/clfs/knn.py mvpa/clfs/libsvmc/_svm.py mvpa/clfs/libsvmc/svm.py mvpa/clfs/meta.py mvpa/clfs/ridge.py mvpa/clfs/smlr.py mvpa/clfs/stats.py mvpa/clfs/transerror.py mvpa/data/v73.mat mvpa/datasets/channel.py mvpa/datasets/miscfx.py mvpa/datasets/splitters.py mvpa/featsel/helpers.py mvpa/mappers/base.py mvpa/mappers/projection.py mvpa/mappers/wavelet.py mvpa/mappers/zscore.py mvpa/measures/base.py mvpa/misc/cmdline.py mvpa/misc/data_generators.py mvpa/misc/errorfx.py mvpa/misc/fsl/base.py mvpa/misc/fsl/flobs.py mvpa/misc/fx.py mvpa/misc/io/base.py mvpa/misc/plot/base.py mvpa/misc/plot/erp.py mvpa/misc/plot/topo.py mvpa/misc/support.py mvpa/misc/transformers.py mvpa/testing/__init__.py mvpa/tests/__init__.py mvpa/tests/main.py mvpa/tests/runner.py mvpa/tests/test_atlases.py mvpa/tests/test_clf.py mvpa/tests/test_clfcrossval.py mvpa/tests/test_cmdline.py mvpa/tests/test_datameasure.py mvpa/tests/test_dataset.py mvpa/tests/test_datasetfx.py mvpa/tests/test_datasetng.py mvpa/tests/test_enet.py mvpa/tests/test_glmnet.py mvpa/tests/test_hdf5.py mvpa/tests/test_hyperalignment.py mvpa/tests/test_iohelpers.py mvpa/tests/test_knn.py mvpa/tests/test_lars.py mvpa/tests/test_mdp.py mvpa/tests/test_neighborhood.py mvpa/tests/test_niftidataset.py mvpa/tests/test_rfe.py mvpa/tests/test_smlr.py mvpa/tests/test_stats.py mvpa/tests/test_stats_sp.py mvpa/tests/test_support.py mvpa/tests/test_svm.py mvpa/tests/test_svmkernels.py mvpa/tests/test_transerror.py mvpa/tests/test_transformers.py mvpa/tests/test_verbosity.py mvpa/tests/test_waveletmapper.py mvpa/tests/test_zscoremapper.py mvpa/tests/tests_warehouse.py tools/bib2rst_ref.py tools/daily_tests.sh tools/refactor_camel_case.sh tools/sitemap.sh Merge commit 'alioth/mh/master' into eo/master CIA Perl client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276182786 emanuele 715ce58 mvpa/tests/test_prototypemapper.py BF: repliminary fix to avoid test to fail. When prototypes are a list and samples are an ndarray of objects the samples extraction does not work well and wrong data arraves to the similarity computation function. This fix creates prototypes as an ndarray of objects which solve the issue. To Michael & Yaroslav: which is the more generic form of Dataset we accept? just iterable containers or something better like ndarray of objects? After some thoughts I guess we should choose ndarray of objects, nothing less. CIA Perl client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276182773 emanuele 20cfc6a .gitignore Makefile doc/examples/hyperplane_demo.py doc/examples/mri_plot.py doc/examples/permutation_test.py doc/examples/pymvpa.cfg doc/examples/tutorial_lib.py doc/misc/exampledata.readme doc/misc/references.bib doc/source/_templates/layout.html doc/source/conf.py doc/source/contents.rst doc/source/datadb.rst doc/source/datadb/demo_blockfmri.rst doc/source/datadb/haxby2001.rst doc/source/datadb/mnist.rst doc/source/examples.rst doc/source/glossary.rst doc/source/modref.rst doc/source/references.rst doc/source/tutorial.rst doc/source/tutorial1_start.rst doc/source/tutorial2_datasets.rst doc/source/tutorial3_mappers.rst doc/source/tutorial4_classifiers.rst doc/source/tutorial5_searchlight.rst mvpa/__init__.py mvpa/algorithms/hyperalignment.py mvpa/base/__init__.py mvpa/base/collections.py mvpa/base/dataset.py mvpa/base/dochelpers.py mvpa/base/externals.py mvpa/base/hdf5.py mvpa/base/types.py 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mvpa/tests/test_niftidataset.py mvpa/tests/test_stats.py mvpa/tests/test_stats_sp.py mvpa/tests/test_support.py mvpa/tests/tests_warehouse.py Merge commit 'alioth/mh/master' into eo/master CIA Perl client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276182767 emanuele 481074a doc/source/tutorial4_classifiers.rst mvpa/base/collections.py mvpa/clfs/knn.py mvpa/clfs/stats.py mvpa/featsel/rfe.py mvpa/mappers/base.py mvpa/mappers/projection.py mvpa/mappers/svd.py mvpa/misc/plot/base.py mvpa/tests/test_collections.py mvpa/tests/test_knn.py tools/refactor_camel_case.sh Merge commit 'alioth/mh/master' into eo/master CIA Perl client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276182627 emanuele 7172216 Makefile bin/atlaslabeler bin/mvpa-prep-fmri doc/examples/clfs_examples.py doc/examples/curvefitting.py doc/examples/erp_plot.py doc/examples/eventrelated.py doc/examples/gpr.py doc/examples/gpr_model_selection0.py doc/examples/match_distribution.py doc/examples/permutation_test.py 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Perl client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276182478 emanuele 56e12b0 COPYING Changelog Makefile TODO bin/atlaslabeler doc/examples/clfs_examples.py doc/examples/curvefitting.py doc/examples/eventrelated.py doc/examples/gpr.py doc/examples/gpr_model_selection0.py doc/examples/match_distribution.py doc/examples/mdp_mnist.py doc/examples/mri_plot.py doc/examples/permutation_test.py doc/examples/projections.py doc/examples/pylab_2d.py doc/examples/pymvpa.cfg doc/examples/searchlight.py doc/examples/searchlight_app.py doc/examples/searchlight_dsm.py doc/examples/searchlight_minimal.py doc/examples/sensanas.py doc/examples/smellit.py doc/examples/smlr.py doc/examples/start_easy.py doc/examples/svdclf.py doc/examples/tutorial_lib.py doc/misc/references.bib doc/misc/references.in doc/pics/.gitignore doc/pics/Makefile doc/pics/ex_plot_lightbox.svg doc/pics/pymvpa_icons.svg doc/pics/pymvpa_logo.svg doc/source/_static/.gitignore doc/source/_static/logo.pdf 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mvpa/atlases/base.py mvpa/atlases/fsl.py mvpa/atlases/warehouse.py mvpa/base/__init__.py mvpa/base/config.py mvpa/base/dataset.py mvpa/base/dochelpers.py mvpa/base/externals.py mvpa/base/info.py mvpa/base/verbosity.py mvpa/clfs/_svmbase.py mvpa/clfs/base.py mvpa/clfs/blr.py mvpa/clfs/distance.py mvpa/clfs/enet.py mvpa/clfs/glmnet.py mvpa/clfs/gnb.py mvpa/clfs/gpr.py mvpa/clfs/knn.py mvpa/clfs/lars.py mvpa/clfs/libsvmc/_svm.py mvpa/clfs/libsvmc/sens.py mvpa/clfs/libsvmc/svm.py mvpa/clfs/meta.py mvpa/clfs/plr.py mvpa/clfs/ridge.py mvpa/clfs/sg/sens.py mvpa/clfs/sg/svm.py mvpa/clfs/smlr.py mvpa/clfs/stats.py mvpa/clfs/transerror.py mvpa/clfs/warehouse.py mvpa/datasets/__init__.py mvpa/datasets/base.py mvpa/datasets/channel.py mvpa/datasets/eep.py mvpa/datasets/miscfx.py mvpa/datasets/mri.py mvpa/datasets/splitters.py mvpa/featsel/base.py mvpa/featsel/helpers.py mvpa/featsel/ifs.py mvpa/featsel/rfe.py mvpa/kernels/base.py mvpa/kernels/np.py mvpa/mappers/__init__.py mvpa/mappers/base.py mvpa/mappers/detrend.py mvpa/mappers/filter.py mvpa/mappers/flatten.py mvpa/mappers/fx.py mvpa/mappers/mdp_adaptor.py mvpa/mappers/procrustean.py mvpa/mappers/projection.py mvpa/mappers/som.py mvpa/mappers/svd.py mvpa/mappers/wavelet.py mvpa/mappers/zscore.py mvpa/measures/__init__.py mvpa/measures/anova.py mvpa/measures/base.py mvpa/measures/corrcoef.py mvpa/measures/corrstability.py mvpa/measures/ds.py mvpa/measures/glm.py mvpa/measures/irelief.py mvpa/measures/searchlight.py mvpa/misc/attributes.py mvpa/misc/cmdline.py mvpa/misc/data_generators.py mvpa/misc/fsl/base.py mvpa/misc/fx.py mvpa/misc/io/base.py mvpa/misc/neighborhood.py mvpa/misc/plot/base.py mvpa/misc/state.py mvpa/misc/stats.py mvpa/misc/support.py mvpa/misc/transformers.py mvpa/support/rpy2_addons.py mvpa/testing/__init__.py mvpa/tests/__init__.py mvpa/tests/main.py mvpa/tests/test_atlases.py mvpa/tests/test_clf.py mvpa/tests/test_clfcrossval.py mvpa/tests/test_datameasure.py mvpa/tests/test_dataset.py mvpa/tests/test_datasetfx.py mvpa/tests/test_datasetng.py mvpa/tests/test_eepdataset.py mvpa/tests/test_enet.py mvpa/tests/test_fxmapper.py mvpa/tests/test_glmnet.py mvpa/tests/test_gnb.py mvpa/tests/test_gpr.py mvpa/tests/test_hyperalignment.py mvpa/tests/test_ifs.py mvpa/tests/test_iohelpers.py mvpa/tests/test_knn.py mvpa/tests/test_lars.py mvpa/tests/test_mapper_sp.py mvpa/tests/test_mdp.py mvpa/tests/test_neighborhood.py mvpa/tests/test_niftidataset.py mvpa/tests/test_params.py mvpa/tests/test_perturbsensana.py mvpa/tests/test_plr.py mvpa/tests/test_procrust.py mvpa/tests/test_prototypemapper.py mvpa/tests/test_regr.py mvpa/tests/test_report.py mvpa/tests/test_rfe.py mvpa/tests/test_ridge.py mvpa/tests/test_searchlight.py mvpa/tests/test_smlr.py mvpa/tests/test_som.py mvpa/tests/test_splitter.py mvpa/tests/test_state.py mvpa/tests/test_stats.py mvpa/tests/test_stats_sp.py mvpa/tests/test_support.py mvpa/tests/test_svm.py mvpa/tests/test_transerror.py mvpa/tests/test_transformers.py mvpa/tests/test_zscoremapper.py mvpa/tests/tests_warehouse.py mvpa/tests/tests_warehouse_clfs.py setup.py tools/bib2rst_ref.py tools/daily_tests.sh tools/ex2rst tools/fillin_states tools/refactor_camel_case.sh tools/state_refactor.sh Merge commit 'alioth/mh/master' into eo/master CIA Perl client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276182397 emanuele 481074a doc/source/tutorial4_classifiers.rst mvpa/base/collections.py mvpa/clfs/knn.py mvpa/clfs/stats.py mvpa/featsel/rfe.py mvpa/mappers/base.py mvpa/mappers/projection.py mvpa/mappers/svd.py mvpa/misc/plot/base.py mvpa/tests/test_collections.py mvpa/tests/test_knn.py tools/refactor_camel_case.sh Merge commit 'alioth/mh/master' into eo/master CIA Perl client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276182160 emanuele 56e12b0 COPYING Changelog Makefile TODO bin/atlaslabeler doc/examples/clfs_examples.py doc/examples/curvefitting.py doc/examples/eventrelated.py doc/examples/gpr.py doc/examples/gpr_model_selection0.py 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mvpa/clfs/enet.py mvpa/clfs/glmnet.py mvpa/clfs/gnb.py mvpa/clfs/gpr.py mvpa/clfs/knn.py mvpa/clfs/lars.py mvpa/clfs/libsvmc/_svm.py mvpa/clfs/libsvmc/sens.py mvpa/clfs/libsvmc/svm.py mvpa/clfs/meta.py mvpa/clfs/plr.py mvpa/clfs/ridge.py mvpa/clfs/sg/sens.py mvpa/clfs/sg/svm.py mvpa/clfs/smlr.py mvpa/clfs/stats.py mvpa/clfs/transerror.py mvpa/clfs/warehouse.py mvpa/datasets/__init__.py mvpa/datasets/base.py mvpa/datasets/channel.py mvpa/datasets/eep.py mvpa/datasets/miscfx.py mvpa/datasets/mri.py mvpa/datasets/splitters.py mvpa/featsel/base.py mvpa/featsel/helpers.py mvpa/featsel/ifs.py mvpa/featsel/rfe.py mvpa/kernels/base.py mvpa/kernels/np.py mvpa/mappers/__init__.py mvpa/mappers/base.py mvpa/mappers/detrend.py mvpa/mappers/filter.py mvpa/mappers/flatten.py mvpa/mappers/fx.py mvpa/mappers/mdp_adaptor.py mvpa/mappers/procrustean.py mvpa/mappers/projection.py mvpa/mappers/som.py mvpa/mappers/svd.py mvpa/mappers/wavelet.py mvpa/mappers/zscore.py mvpa/measures/__init__.py mvpa/measures/anova.py mvpa/measures/base.py mvpa/measures/corrcoef.py mvpa/measures/corrstability.py mvpa/measures/ds.py mvpa/measures/glm.py mvpa/measures/irelief.py mvpa/measures/searchlight.py mvpa/misc/attributes.py mvpa/misc/cmdline.py mvpa/misc/data_generators.py mvpa/misc/fsl/base.py mvpa/misc/fx.py mvpa/misc/io/base.py mvpa/misc/neighborhood.py mvpa/misc/plot/base.py mvpa/misc/state.py mvpa/misc/stats.py mvpa/misc/support.py mvpa/misc/transformers.py mvpa/support/rpy2_addons.py mvpa/testing/__init__.py mvpa/tests/__init__.py mvpa/tests/main.py mvpa/tests/test_atlases.py mvpa/tests/test_clf.py mvpa/tests/test_clfcrossval.py mvpa/tests/test_datameasure.py mvpa/tests/test_dataset.py mvpa/tests/test_datasetfx.py mvpa/tests/test_datasetng.py mvpa/tests/test_eepdataset.py mvpa/tests/test_enet.py mvpa/tests/test_fxmapper.py mvpa/tests/test_glmnet.py mvpa/tests/test_gnb.py mvpa/tests/test_gpr.py mvpa/tests/test_hyperalignment.py mvpa/tests/test_ifs.py mvpa/tests/test_iohelpers.py mvpa/tests/test_knn.py mvpa/tests/test_lars.py mvpa/tests/test_mapper_sp.py mvpa/tests/test_mdp.py mvpa/tests/test_neighborhood.py mvpa/tests/test_niftidataset.py mvpa/tests/test_params.py mvpa/tests/test_perturbsensana.py mvpa/tests/test_plr.py mvpa/tests/test_procrust.py mvpa/tests/test_prototypemapper.py mvpa/tests/test_regr.py mvpa/tests/test_report.py mvpa/tests/test_rfe.py mvpa/tests/test_ridge.py mvpa/tests/test_searchlight.py mvpa/tests/test_smlr.py mvpa/tests/test_som.py mvpa/tests/test_splitter.py mvpa/tests/test_state.py mvpa/tests/test_stats.py mvpa/tests/test_stats_sp.py mvpa/tests/test_support.py mvpa/tests/test_svm.py mvpa/tests/test_transerror.py mvpa/tests/test_transformers.py mvpa/tests/test_zscoremapper.py mvpa/tests/tests_warehouse.py mvpa/tests/tests_warehouse_clfs.py setup.py tools/bib2rst_ref.py tools/daily_tests.sh tools/ex2rst tools/fillin_states tools/refactor_camel_case.sh tools/state_refactor.sh Merge commit 'alioth/mh/master' into eo/master CIA Perl client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276182128 emanuele 7172216 Makefile bin/atlaslabeler bin/mvpa-prep-fmri doc/examples/clfs_examples.py doc/examples/curvefitting.py doc/examples/erp_plot.py doc/examples/eventrelated.py doc/examples/gpr.py doc/examples/gpr_model_selection0.py doc/examples/match_distribution.py doc/examples/permutation_test.py doc/examples/projections.py doc/examples/pylab_2d.py doc/examples/searchlight_dsm.py doc/examples/searchlight_minimal.py doc/examples/smellit.py doc/examples/smlr.py doc/examples/svdclf.py doc/examples/topo_plot.py doc/examples/tutorial_lib.py doc/source/_static/pymvpa_logo.jpg doc/source/classifiers.rst doc/source/conf.py doc/source/faq.rst doc/source/measures.rst doc/source/modref.rst doc/source/tutorial.rst doc/source/tutorial1_start.rst doc/source/tutorial2_datasets.rst doc/source/tutorial3_mappers.rst doc/source/tutorial4_classifiers.rst doc/source/tutorial5_searchlight.rst doc/source/tutorial6_sensitivity.rst doc/source/tutorial7_eventrelated.rst doc/source/tutorial8_significance.rst doc/source/tutorial_classifiers.rst doc/source/tutorial_datasets.rst doc/source/tutorial_eventrelated.rst doc/source/tutorial_mappers.rst doc/source/tutorial_searchlight.rst doc/source/tutorial_sensitivity.rst doc/source/tutorial_significance.rst doc/source/tutorial_start.rst mvpa/atlases/base.py mvpa/atlases/fsl.py mvpa/atlases/transformation.py mvpa/base/__init__.py mvpa/base/externals.py mvpa/base/hdf5.py mvpa/base/report.py mvpa/base/verbosity.py mvpa/clfs/base.py mvpa/clfs/distance.py mvpa/clfs/gnb.py mvpa/clfs/gpr.py mvpa/clfs/knn.py mvpa/clfs/libsvmc/_svm.py mvpa/clfs/libsvmc/svm.py mvpa/clfs/meta.py mvpa/clfs/ridge.py mvpa/clfs/smlr.py mvpa/clfs/stats.py mvpa/clfs/transerror.py mvpa/data/v73.mat mvpa/datasets/channel.py mvpa/datasets/miscfx.py mvpa/datasets/splitters.py mvpa/featsel/helpers.py mvpa/mappers/base.py mvpa/mappers/projection.py mvpa/mappers/wavelet.py mvpa/mappers/zscore.py mvpa/measures/base.py mvpa/misc/cmdline.py mvpa/misc/data_generators.py mvpa/misc/errorfx.py mvpa/misc/fsl/base.py mvpa/misc/fsl/flobs.py mvpa/misc/fx.py mvpa/misc/io/base.py mvpa/misc/plot/base.py mvpa/misc/plot/erp.py mvpa/misc/plot/topo.py mvpa/misc/support.py mvpa/misc/transformers.py mvpa/testing/__init__.py mvpa/tests/__init__.py mvpa/tests/main.py mvpa/tests/runner.py mvpa/tests/test_atlases.py mvpa/tests/test_clf.py mvpa/tests/test_clfcrossval.py mvpa/tests/test_cmdline.py mvpa/tests/test_datameasure.py mvpa/tests/test_dataset.py mvpa/tests/test_datasetfx.py mvpa/tests/test_datasetng.py mvpa/tests/test_enet.py mvpa/tests/test_glmnet.py mvpa/tests/test_hdf5.py mvpa/tests/test_hyperalignment.py mvpa/tests/test_iohelpers.py mvpa/tests/test_knn.py mvpa/tests/test_lars.py mvpa/tests/test_mdp.py mvpa/tests/test_neighborhood.py mvpa/tests/test_niftidataset.py mvpa/tests/test_rfe.py mvpa/tests/test_smlr.py mvpa/tests/test_stats.py mvpa/tests/test_stats_sp.py mvpa/tests/test_support.py mvpa/tests/test_svm.py mvpa/tests/test_svmkernels.py mvpa/tests/test_transerror.py mvpa/tests/test_transformers.py mvpa/tests/test_verbosity.py mvpa/tests/test_waveletmapper.py mvpa/tests/test_zscoremapper.py mvpa/tests/tests_warehouse.py tools/bib2rst_ref.py tools/daily_tests.sh tools/refactor_camel_case.sh tools/sitemap.sh Merge commit 'alioth/mh/master' into eo/master CIA Perl client for Git 1.0+alioth1 pymvpa pymvpa per/master 1276181969 emanuele 481074a doc/source/tutorial4_classifiers.rst mvpa/base/collections.py mvpa/clfs/knn.py mvpa/clfs/stats.py mvpa/featsel/rfe.py mvpa/mappers/base.py mvpa/mappers/projection.py mvpa/mappers/svd.py mvpa/misc/plot/base.py mvpa/tests/test_collections.py mvpa/tests/test_knn.py tools/refactor_camel_case.sh Merge commit 'alioth/mh/master' into eo/master