http://cia.vc/stats/project/pism208151171111the Parallel Ice Sheet ModelPISM models ice sheets and ice shelves like those in Antarctic and Greenland. It is parallel, well-documented, and verifiable. It has improved schemes for sliding, polythermal ice, and bed deformation.
NonePISMhttp://www.pism-docs.org/Nonegithub1http://www.github.compismdev1329148646Torsten Albrecht70a72beComment a line in iMcalving.cc using the online editor. - http://git.io/LpHJUAhttps://github.com/pism/pism/commit/70a72bee72c0557dbe30251ae206cf28abd01c77 src/base/iMcalving.cc github1http://www.github.compismdev1328866051Torsten Albrecht5e7d551Modified EigenCalving. - http://git.io/6sBMzwhttps://github.com/pism/pism/commit/5e7d551fe18f8365e082130beb6393d9b7065f14 src/base/iMcalving.cc github1http://www.github.compismdev1328889351Torsten Albrecht18105eeModified partgrid mass flux.
1) partgrid mass flux should symmetric at ice margin (in and out), also
for grounded margins
2) for floating ice boundaries next to ice free bedrock the flux should
vanish (that's a specific case butrelevant in regional ice shelf
simulations at PIK)
3) Minor changes in cfl_eigencalving routine - http://git.io/PJmmdghttps://github.com/pism/pism/commit/18105ee13b39f6062950dbf6f0b9b5aaa5f81a94 src/base/iMcalving.ccsrc/base/iMgeometry.ccsrc/base/iMpartgrid.ccsrc/base/util/Mask.hh github1http://www.github.compismdev1328865864Torsten Albrecht6016ceeModified eigenCalving.
1) There was a discrepancy in calculation of H_average (with respect to
the old mask and the newly updated H field)
2) In the calculation of principal strain rates as offset-neighbor
average avoid taking into account margin cells, which are affected by
the inward scheme in SSA.cc - http://git.io/t9sbCghttps://github.com/pism/pism/commit/6016cee542b57c307cbf4ec4dda3331025d17d25 src/base/iMcalving.cc github1http://www.github.compismdev1328889351Torsten Albrecht737a4a5Modified partgrid mass flux.
1) partgrid mass flux should symmetric at ice margin (in and out), also
for grounded margins
2) for floating ice boundaries next to ice free bedrock the flux should
vanish (that's a specific case butrelevant in regional ice shelf
simulations at PIK)
3) Minor changes in cfl_eigencalving routine - http://git.io/2w9ilQhttps://github.com/pism/pism/commit/737a4a5189608c4a7096fd807aec9f88ff789ea6 src/base/iMcalving.ccsrc/base/iMgeometry.ccsrc/base/iMpartgrid.ccsrc/base/util/Mask.hh github1http://www.github.compismdev1328872143Torsten Albrecht25196b2Loaded up accidentally bin, build and lib files by using GitHub for Mac, now git rm them manually. - http://git.io/MMCAeghttps://github.com/pism/pism/commit/25196b2cefbbeff7d134930dab1e7c0bc8231a33 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github1http://www.github.compismdev1328866051Torsten Albrecht98862dfModified EigenCalving. - http://git.io/EK-Pughttps://github.com/pism/pism/commit/98862dfc7036e6c3bc96c9aa3d78b18b2e81de2e src/base/iMcalving.cc github1http://www.github.compismdev1328865864Torsten Albrecht3e7c045Modified eigenCalving.
1) There was a discrepancy in calculation of H_average (with respect to
the old mask and the newly updated H field)
2) In the calculation of principal strain rates as offset-neighbor
average avoid taking into account margin cells, which are affected by
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github1http://www.github.compismdev1328710330Torsten Albrechtf3e110eReverted eigen_calving option(s) and moved cfl_eigencalving and nuBedrock options to pism_options.cc. - http://git.io/00BvCQhttps://github.com/pism/pism/commit/f3e110eb36b587da0d89c272e21f178d162e3c57 src/base/iMcalving.ccsrc/base/iMoptions.ccsrc/base/util/pism_options.cc github1http://www.github.compismdev1328581093Ed Buelerc3508daRef re inversion - http://git.io/BVwZEAhttps://github.com/pism/pism/commit/c3508dab004de810e47e6aac915a4e6cc5eea19e doc/ice_bib.bib github1http://www.github.compismdev1328570172Constantine Khroulevc544561Addressing issue #26 (by fixing typos in SSA.cc in stable0.4). - http://git.io/hpw6AAhttps://github.com/pism/pism/commit/c5445615250c6c5375a6b4c4925a64f94dba3104 src/base/stressbalance/SSA.cc github1http://www.github.compismdev1328564580Constantine Khroulev577fbdbFixes a minor bug in PISMNC3File. - http://git.io/p76loQhttps://github.com/pism/pism/commit/577fbdb59c8a63fe3a96eee6de5102d754a39254 src/base/util/io/PISMNC3File.cc github1http://www.github.compismdev1328286832Torsten Albrechtca98e221) Added adaptive timestep based on CFL-criterion for eigenCalving rate. 2) Fixed a bug in iMcalving concerning calved partially filled grid cells (vHref<0). 3) Changed eigencalving option, so that only -eigen_calving_K is needed in order to switch on do_eigen_calving. - http://git.io/h9l5gQhttps://github.com/pism/pism/commit/ca98e226dbfa3279176ca902a8cb49db1d298c13 src/base/iMadaptive.ccsrc/base/iMcalving.ccsrc/base/iMgeometry.ccsrc/base/iMoptions.ccsrc/base/iceModel.hhsrc/base/util/pism_options.ccsrc/pism_config.cdl github1http://www.github.compismdev1328223739David Maxwellc4272faHousekeeping of python inversion code.
Lots of code from examples/inverse has been properly promoted to code in site_packages/PISM
The unholy examples/inverse/pismssaforward.py has been refactored and is dead.
Python "executables" vel2tauc.py and a few others are now installed in the PISM binaries directory.
Still more PISMIO->PIO fixes (including fixing some of my broken fixes…) - http://git.io/u7Ta6ghttps://github.com/pism/pism/commit/c4272fa544a09a5d5b14be288c881505210d4c3d CMakeLists.txtexamples/inverse/invert_testi.pyexamples/inverse/make_synth_ssa.pyexamples/inverse/sia.pyexamples/inverse/simple_square/invert_square.pyexamples/inverse/tauc2tillphi.pyexamples/inverse/vel2tauc.pysite-packages/PISM/__init__.pysite-packages/PISM/ssa.pysite-packages/PISM/invert_ssa.pysite-packages/PISM/sia.pysite-packages/PISM/sipletools.pyexamples/inverse/linalg_pism.pyexamples/inverse/pismssaforward.py github1http://www.github.compismdev1328215231David Maxwellb56980fPISMIO -> PIO updates in a few python places - http://git.io/SR-UGAhttps://github.com/pism/pism/commit/b56980f30789a830541df11423d81ed10f964196 examples/inverse/make_synth_ssa.pyexamples/inverse/vel2tauc.pysite-packages/PISM/ssa.py github1http://www.github.compismdev1328192651Torsten Albrechta06685emodification in CFBC when applied to a setup of an ice shelf confined in a bay of ice-free land avoiding the uphill creep of ice... - http://git.io/h-uFJwhttps://github.com/pism/pism/commit/a06685e9e28fb5f1d91e66fd1309f8fbc45e8aea src/base/stressbalance/SSA.ccsrc/base/stressbalance/SSAFD.cc github1http://www.github.compismdev1328114162Torsten Albrecht6dd5ed7changes concerning the ice schelf - bedrock interface - http://git.io/0FXM4whttps://github.com/pism/pism/commit/6dd5ed7deb0af5292eff8a2b40d5fc4ecb3568c6 src/base/iMoptions.ccsrc/base/stressbalance/SSA.ccsrc/base/stressbalance/SSAFD.ccsrc/pism_config.cdl github1http://www.github.compismdev1327975318David Maxwellfc7efaaLanguage has been cleaned up in InvSSAForwardProblem. We are technically inverting for some parameter zeta, and tauc=tauc(zeta) (e.g. zeta*zeta or exp(zeta) or just plain old zeta). So InvSSAForwardProblem::set_tauc becomes InvSSAForwardProblem::set_zeta, etc.
InvSSAForwardProblem now allows zeta/tauc to be fixed at certain nodes (e.g. where ice is floating or absent). This can be turned on for now in vel2tauc with the option -use_zeta_fixed_mask; this unhelpfully named option is going to go away soon when this feature is turned on by default. This feature will be used for inversions in regional models, where tauc in the no_model_mask zone will be fixed.
plotting tweaks in vel2tauc
make_synth_ssa has new options: -misfit_type = grounded or fast to build a misfit functional based on all grounded ice or just the fast stuff (as determined by -fast_ice_speed) - http://git.io/39c-wghttps://github.com/pism/pism/commit/fc7efaa2cd0ae4e9c6d176ea9c1284fb75c3a514 examples/inverse/make_synth_ssa.pyexamples/inverse/pismssaforward.pyexamples/inverse/vel2tauc.pysrc/inverse/InvSSAForwardProblem.ccsrc/inverse/InvSSAForwardProblem.hh github1http://www.github.compismdev1327875222David Maxwell5e182daAddressed weirdness with mpiexec and ssa python tests:
Call mpiexec without an absolute path and it inherits a PATH from the environment.
Call it with an absolute path (/usr/bin/mpiexec) and you set the PATH to /usr/bin.
Our tests call mpiexec with an absolute path to ensure we use the correct version, but this means there is a path side effect.
Calling a python script with a shebang with mpiexec can then result in a different python executable being used than the user's standard environment would find. If a different python version is picked up (e.g. 2.6 rather than 2.7), you can fail to find python modules such as PISM and petsc4py if they were compiled for a mismatched version of python. Consequently, tests fail.
Now any mpiexec calls in the test suite that run a python script actually run python explicitly, with an absolute path to the user's python executable. (i.e /usr/bin/mpiexec /opt/local/bin/python my_test.py rather than /usr/bin/mpiexec mytest.py)
Fixed bug in parallel SSA test reporting messages.
All SSA tests are now run in parallel. Only prose was being run in parallel. Maybe I unintentionally broke this last summer. - http://git.io/m8YN6whttps://github.com/pism/pism/commit/5e182da6f7d7cb587c28e9583e95bd2374330a3b site-packages/PISM/ssa.pysite-packages/PISM/util.pytest/regression/CMakeLists.txttest/regression/ssa/ssa_testi_fd.shtest/regression/ssa/ssa_testi_fem.shtest/regression/ssa/ssa_testj_fd.shtest/regression/ssa/ssa_testj_fem.shtest/regression/ssa/ssafem_test_linear.shtest/regression/ssa/ssafem_test_plug.shtest/regression/test_19.sh github1http://www.github.compismdev1327797423Constantine Khroulevc6a27acAdds "#define MPI_INCLUDED" to trick NetCDF. - http://git.io/iQyc9Ahttps://github.com/pism/pism/commit/c6a27ac7b1aeb8d8188aa7e3fe140100f59790e3 src/base/util/io/PIO.hh