relax

Renamed all of the RDC and PCS only frame order system tests to be more obvious.

Wed, 08 Feb 2012 18:10:47 +0000

Commit by bugman :: r15329 /branches/frame_order_testing/test_suite/system_tests/frame_order.py:

Renamed all of the RDC and PCS only frame order system tests to be more obvious.

Updates for the isotropic cone frame order system test chi-square values.

Wed, 08 Feb 2012 18:07:24 +0000

Commit by bugman :: r15328 /branches/frame_order_testing/test_suite/ (2 files in 2 dirs):

Updates for the isotropic cone frame order system test chi-square values.

Merged revisions 15326 via svnmerge from...

Wed, 08 Feb 2012 17:59:48 +0000

Commit by bugman :: r15327 /branches/frame_order_testing/ (5 files in 3 dirs):

Merged revisions 15326 via svnmerge from
svn+ssh://bugman at svn dot gna dot org/svn/relax/1.3

........
  r15326 | bugman | 2012-02-08 15:33:34 +0100 (Wed, 08 Feb 2012) | 5 lines

  Implemented the rdc.delete and pcs.delete user function backends.

  This code previously did not exist, although the front ends were exposed to the user!
........

Implemented the rdc.delete and pcs.delete user function backends. This code...

Wed, 08 Feb 2012 17:57:46 +0000

Commit by bugman :: r15326 /1.3/ (4 files in 2 dirs):

Implemented the rdc.delete and pcs.delete user function backends.

This code previously did not exist, although the front ends were exposed to the user!

Improvements and clean ups for the frame order system tests. A tearDown() method...

Wed, 08 Feb 2012 17:42:45 +0000

Commit by bugman :: r15325 /branches/frame_order_testing/test_suite/system_tests/ (2 files in 2 dirs):

Improvements and clean ups for the frame order system tests.

A tearDown() method is now provided to clean up the relax state, and the flags are now all stored
in the status object rather than data store to allow states to be loaded.

The loading state flags are now set for some of the frame order system tests.

Wed, 08 Feb 2012 17:41:35 +0000

Commit by bugman :: r15324 /branches/frame_order_testing/test_suite/system_tests/scripts/frame_order/cam/ (iso_cone.py iso_cone_torsionless.py):

The loading state flags are now set for some of the frame order system tests.

Merged revisions 15322 via svnmerge from...

Wed, 08 Feb 2012 17:37:46 +0000

Commit by bugman :: r15323 /branches/frame_order_testing/ (. data/__init__.py):

Merged revisions 15322 via svnmerge from
svn+ssh://bugman at svn dot gna dot org/svn/relax/1.3

........
  r15322 | bugman | 2012-02-08 15:13:04 +0100 (Wed, 08 Feb 2012) | 3 lines

  The relax data store __repr__() method now prints out all objects within the base object.
........

The relax data store repr() method now prints out all objects within the...

Wed, 08 Feb 2012 17:37:16 +0000

Commit by bugman :: r15322 /1.3/data/__init__.py:

The relax data store __repr__() method now prints out all objects within the base object.

Fix for the failure reporting of the frame order system tests when a save state...

Wed, 08 Feb 2012 17:12:24 +0000

Commit by bugman :: r15321 /branches/frame_order_testing/test_suite/system_tests/frame_order.py:

Fix for the failure reporting of the frame order system tests when a save state is used.

Fix for the base frame order system test script for when a loaded state is being...

Wed, 08 Feb 2012 17:10:07 +0000

Commit by bugman :: r15320 /branches/frame_order_testing/test_suite/system_tests/scripts/frame_order/cam/base_script.py:

Fix for the base frame order system test script for when a loaded state is being used.

Reverted r15317 as the change of behaviour now occurs in the base script. The...

Wed, 08 Feb 2012 15:10:29 +0000

Commit by bugman :: r15319 /branches/frame_order_testing/test_suite/system_tests/scripts/frame_order/cam/iso_cone.py:

Reverted r15317 as the change of behaviour now occurs in the base script.

The command used was:
svn merge -r15317:r15316 .

.....
  r15317 | bugman | 2012-02-08 11:41:39 +0100 (Wed, 08 Feb 2012) | 6 lines

  Switched the isotropic cone frame order system test to use the save file.

  This significantly speeds up the system test, as all the sequence generation and RDC and PCS data
  reading is skipped.
.....

Modified the base script for the frame order system tests to allow the state...

Wed, 08 Feb 2012 14:16:19 +0000

Commit by bugman :: r15318 /branches/frame_order_testing/test_suite/system_tests/scripts/frame_order/cam/base_script.py:

Modified the base script for the frame order system tests to allow the state file to be used.

If the load_state flag is set, then instead of the full loading of all the data, the pre-created
state files in the shared data directories will be used. This is to significantly speed up these
system tests.

Switched the isotropic cone frame order system test to use the save file. This...

Wed, 08 Feb 2012 14:05:40 +0000

Commit by bugman :: r15317 /branches/frame_order_testing/test_suite/system_tests/scripts/frame_order/cam/iso_cone.py:

Switched the isotropic cone frame order system test to use the save file.

This significantly speeds up the system test, as all the sequence generation and RDC and PCS data
reading is skipped.

Switched to using the value.set user function for all the setting of parameters.

Wed, 08 Feb 2012 14:01:05 +0000

Commit by bugman :: r15316 /branches/frame_order_testing/test_suite/shared_data/frame_order/cam/ (13 files in 12 dirs):

Switched to using the value.set user function for all the setting of parameters.

Fix for the torsionless frame order model test data matching that of r15314.

Wed, 08 Feb 2012 13:52:39 +0000

Commit by bugman :: r15315 /branches/frame_order_testing/test_suite/shared_data/frame_order/cam/iso_cone_torsionless/frame_order.py:

Fix for the torsionless frame order model test data matching that of r15314.

Fix for the cone axis in the isotropic cone frame order model system test. The...

Wed, 08 Feb 2012 13:51:34 +0000

Commit by bugman :: r15314 /branches/frame_order_testing/test_suite/system_tests/scripts/frame_order/cam/iso_cone_torsionless.py:

Fix for the cone axis in the isotropic cone frame order model system test.

The azimuthal and polar angles did not match!

The torsionless iso cone model target functions now accept the ave pos alpha...

Tue, 07 Feb 2012 21:15:03 +0000

Commit by bugman :: r15313 /branches/frame_order_testing/maths_fns/frame_order.py:

The torsionless iso cone model target functions now accept the ave pos alpha Euler angle.

The average position alpha Euler angle has been reintroduced into the...

Tue, 07 Feb 2012 21:09:15 +0000

Commit by bugman :: r15312 /branches/frame_order_testing/specific_fns/frame_order.py:

The average position alpha Euler angle has been reintroduced into the torsionless iso cone model.

This frame order model appears to require this parameter!

Added a script and the result for calculating the exact frame order matrix.

Tue, 07 Feb 2012 19:58:29 +0000

Commit by bugman :: r15311 /branches/frame_order_testing/test_suite/shared_data/frame_order/cam/iso_cone_torsionless/ (2 files):

Added a script and the result for calculating the exact frame order matrix.

Re-performed the frame order analysis on the isotropic cone test model data....

Tue, 07 Feb 2012 19:16:37 +0000

Commit by bugman :: r15310 /branches/frame_order_testing/test_suite/shared_data/frame_order/cam/iso_cone/ (4 files):

Re-performed the frame order analysis on the isotropic cone test model data.

This is to update the save file for the recently changed spin variable names.

relax

Renamed all of the RDC and PCS only frame order system tests to be more obvious.

Updates for the isotropic cone frame order system test chi-square values.

Merged revisions 15326 via svnmerge from...

Implemented the rdc.delete and pcs.delete user function backends. This code...

Improvements and clean ups for the frame order system tests. A tearDown() method...

The loading state flags are now set for some of the frame order system tests.

Merged revisions 15322 via svnmerge from...

The relax data store __repr__() method now prints out all objects within the...

Fix for the failure reporting of the frame order system tests when a save state...

Fix for the base frame order system test script for when a loaded state is being...

Reverted r15317 as the change of behaviour now occurs in the base script. The...

Modified the base script for the frame order system tests to allow the state...

Switched the isotropic cone frame order system test to use the save file. This...

Switched to using the value.set user function for all the setting of parameters.

Fix for the torsionless frame order model test data matching that of r15314.

Fix for the cone axis in the isotropic cone frame order model system test. The...

The torsionless iso cone model target functions now accept the ave pos alpha...

The average position alpha Euler angle has been reintroduced into the...

Added a script and the result for calculating the exact frame order matrix.

Re-performed the frame order analysis on the isotropic cone test model data....

The relax data store repr() method now prints out all objects within the...